PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558742.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 332aa    MW: 36773.9 Da    PI: 8.7586
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-1777127156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g+
  XP_010558742.1  77 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRGA 127
                     78*******************......55*************************985 PP

2AP239.91.1e-12169219155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV+ +k  grW++++  +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_010558742.1 169 SKFRGVTLHK-CGRWESRLGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKCNG 219
                     79********.7****995553..1.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-1677135IPR016177DNA-binding domain
PfamPF008472.1E-977126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-1878134IPR001471AP2/ERF domain
PROSITE profilePS5103217.71478134IPR001471AP2/ERF domain
CDDcd000181.35E-1178135No hitNo description
SMARTSM003801.6E-3078140IPR001471AP2/ERF domain
CDDcd000182.95E-22169227No hitNo description
SuperFamilySSF541719.81E-16169228IPR016177DNA-binding domain
PfamPF008476.4E-8169219IPR001471AP2/ERF domain
PROSITE profilePS5103214.644170227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-15170227IPR001471AP2/ERF domain
SMARTSM003806.8E-29170233IPR001471AP2/ERF domain
PRINTSPR003671.7E-5171182IPR001471AP2/ERF domain
PRINTSPR003671.7E-5209229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MWDLNDSPDE AAIVLQESEE KRKRVGSGSG FPVTREFFPV NKEQCGVVSD SSGSGRAEDT  60
SSPPTKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA  120
AIKFRGAEAD INFDIEDYMH DLKQMSNLTK EEFVHFLRRQ STGFPRGTSK FRGVTLHKCG  180
RWESRLGQFL GKKYVYLGLF DSEIEAARAY DKAAIKCNGK DAITNFDPNI YEEELDSDTM  240
PHDTLDLSLG KSTCTGQNFR FGNEAKGPSE EKRNGGEGRL GSDLSLSIRA VGSGQQRQSD  300
GGGKPKSLVA TTAAASSGFR TPCWLHSHGL PL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558742.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotQ9FH951e-119TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLR0EWM51e-120R0EWM5_9BRAS; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80026281e-118(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-110target of early activation tagged (EAT) 3